skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Search for: All records

Creators/Authors contains: "Ahyong, Shane T"

Note: When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher. Some full text articles may not yet be available without a charge during the embargo (administrative interval).
What is a DOI Number?

Some links on this page may take you to non-federal websites. Their policies may differ from this site.

  1. Abstract Against a background of the climate and biodiversity crises, there is an urgent need for robust and citable biodiversity information for policy and management decisions. Species are fundamental units of biodiversity and underpin communication in biology. Delineating, describing, and naming species provide the foundation for tracking biodiversity. Taxonomists recognise over 2 million described species, the scientific names of which follow provisions of codes of nomenclature, providing stability for communication about biodiversity. However, described species represent only a fraction of global biodiversity. Current advances in the fields of molecular biology and the growing use of image-based identifications have resulted in an explosion of informal species names globally, herein referred to as temporary names, increasing the rate of discovery of undescribed species and cryptic species complexes. We define two categories of temporary names: Type 1 names that are delineated in a local context but not further assessed; and Type 2 names that have been taxonomically assessed and recognised as either new or part of an unresolved species complex. We explore the different types and uses of temporary names, indicate how they can be managed in a robust and standardised manner and demonstrate how biodiversity databases, such as WoRMS, can be expanded to allow the tracking of both formal and informal scientific names. We propose a solution for the expanding problem of temporary names by defining and recommending the addition of Type 2 temporary names to nomenclatural databases such as WoRMS. We provide practical recommendations on how such names should be selected for entry and then entered to databases in a standardised way. These recommendations are a small step forward, but their broad adoption would support the robust integration of informal and formal taxonomies. 
    more » « less
    Free, publicly-accessible full text available October 1, 2026
  2. The methane seeps on the Pacific margin of Costa Rica support extensive animal diversity and offer insights into deep-sea biogeography. During five expeditions between 2009 and 2019, we conducted intensive faunal sampling via 63 submersible dives to 11 localities at depths of 300–3600 m. Based on these expeditions and published literature, we compiled voucher specimens, images, and 274 newly published DNA sequences to present a taxonomic inventory of macrofaunal and megafaunal diversity with a focus on invertebrates. In total 488 morphospecies were identified, representing the highest number of distinct morphospecies published from a single seep or vent region to date. Of these, 131 are described species, at least 58 are undescribed species, and the remainder include some degree of taxonomic uncertainty, likely representing additional undescribed species. Of the described species, 38 are known only from the Costa Rica seeps and their vicinity. Fifteen range extensions are also reported for species known from Mexico, the Galápagos seamounts, Chile, and the western Pacific; as well as 16 new depth records and three new seep records for species known to occur at vents or organic falls. No single evolutionary narrative explains the patterns of biodiversity at these seeps, as even morphologically indistinguishable species can show different biogeographic affinities, biogeographic ranges, or depth ranges. The value of careful molecular taxonomy and comprehensive specimen-based regional inventories is emphasized for biodiversity research and monitoring. 
    more » « less
    Free, publicly-accessible full text available January 3, 2026
  3. Estimating stomatopod species diversity using morphology alone has long been difficult; though over 450 species have been described, new species are still being discovered regularly despite the cryptic behaviors of adults. However, the larvae of stomatopods are more easily obtained due to their pelagic habitat, and have been the focus of recent studies of diversity. Studies of morphological diversity describe both conserved and divergent traits in larval stomatopods, but generally cannot be linked to a particular species. Conversely, genetic studies of stomatopod larvae using DNA barcoding can be used to estimate species diversity, but are generally not linked to known species by analyses of morphological characters. Here we combine these two approaches, larval morphology and genetics, to estimate stomatopod species diversity in the Hawaiian Islands. Over 22 operational taxonomic units (OTUs) were identified genetically, corresponding to 20 characterized morphological types. Species from three major superfamilies of stomatopod were identified: Squilloidea (4 OTUs, 3 morphotypes), Gonodactyloidea (9, 8), and Lysiosquilloidea (6, 7). Among these, lysiosquilloids were more diverse based on larval morphotypes and OTUs as compared to previously documented Hawaiian species (3), while squilloids had a lower diversity of species represented by collected larvae as compared to the seven species previously documented. Two OTUs / morphotypes could not be identified to superfamily as their molecular and morphological features did not closely match any available information, suggesting they belong to poorly sampled superfamilies. The pseudosquillid, Pseudosquillana richeri, was discovered for the first time from Hawaiʻi. This study contributes an updated estimate for Hawaiian stomatopod diversity for a total of 24 documented species, provides references for identification of larval stomatopods across the three major superfamilies, and emphasizes the lack of knowledge of species diversity in more cryptic stomatopod superfamilies, such as Lysiosquilloidea.   
    more » « less